@flashofthedark,
Due to some missing info, I can't understand enough of the detail of exactly what you did, and the original situation. I also wonder how much this relates to your previous thread:
wd20ears-help-t23060-20.html#p157223However regarding the question of chkdsk - it may have run on boot (if the filesystem "dirty flag" was set) in which case it's strictly "autochk" and not "chkdsk" (you'd need to ask in a Windows-related forum about whether there's a log file for you to check, as you hoped), and then aborted part way through due to I/O errors. As always, chkdsk/autochk should not be run on a failing drive, as
labtech also said. However, normally chkdsk/autochk would not leave any cross-linked files...
Another possibility is that your drive-waiting-for-recovery was used by Windows for storing the temporary Windows Update files which are downloaded, and again, that process may have been interrupted due to I/O errors which you say that drive was reporting, leading to filesystem corruption. Utimately, I'm not sure you'll find out exactly what happened and even if you did, I doubt it would help with the recovery.
IMHO all I can suggest now is what you should have done in the first place, if you're accepting the (many!) risks of DIY: Perform a raw clone of the drive which you want to recover from, onto a blank drive (or equivalent empty filesystem space) the same size as the original drive, using as many retries and other techniques as needed to get the most complete clone that you can. Personally, I use ddrescue under Linux/Unix for this (since my job is not DR, so I don't have a hardware imager as used by many DR pros) which has the added advantages of no automatic chkdsk/autochk and no Windows Update.

(In some cases, I've even cloned the clone, to have a backup of that to revert back to, if any future step modifies the clone in a way that I don't like). Then use your chosen software to recover files from the clone onto yet another empty drive (or equivalent filesystem space).
If you're not confident that you can avoid future mistakes, or if the files are valuable, then perhaps you should allow an experienced DR company to see the drive, as there is always a limit to even educated guessing about diagnosis via web forums. Good luck whatever you decide.