A few surprises there.

Firstly, V1 should be +2.5V. Perhaps I confused you by placing the "V1" text adjacent to the centre pin. The voltages should be 0V - 5.0V - 2.5V.
V3 appears to be the SDRAM supply. AFAICT, the SDRAM is nominally a 1.35V part but it can operate in 1.5V mode.
MT41K256M8DA-125:M, Micron, 1.35V, 32M x 8 x 8 banks, marking D9PFJ:
http://www.micron.com/~/media/documents ... _ddr3l.pdfV4 looks to be the Vcore for the Indilinx controller. A value of 1.0V seems typical.
I wasn't expecting V2 to be 1.8V, but the "D" version of NAND flash does in fact allow for a 1.8V Vcc, so perhaps this is correct. Otherwise, it may be that the Vcc and VccQ rails are reversed. That is, it could be that the rail I have identified as Vcc is in fact VccQ, and VccQ is in fact Vcc.
V5 is the real surprise, though. The RT8070 generates this supply, but the IC is not present, so where is V5 coming from? Is this normally what happens when VccQ is not connected, ie are the NAND flash chips making some internal connection between Vcc and VccQ, and is this to be expected or does it indicate a failure in one or more of them?
The resistances at pin 7 of the RT8070 appear to be impossible to measure in-circuit as they appear to be loaded by the surrounding circuitry. You would need to remove one of them, but that would require a little microsurgery.

In short, assuming that V1 is in fact +2.5V, we need to confirm the voltage specs for the "E" version of NAND flash and we need to confirm whether I have correctly identified the Vcc and VccQ rails, assuming that is what they are. I'm not sure how we can proceed until we have this information. A datasheet would be ideal. Try contacting Toshiba.