Do you have a Gigabyte motherboard with an Xpress Recovery BIOS?
If so, then your Gigabyte BIOS (Award ?) is trying to grab about 2000 sectors at the top end of the drive in order to store a backup copy of itself for BIOS recovery purposes.
To do this, it hides the copy in a Host Protected Area (HPA).
See ...
http://en.wikipedia.org/wiki/Host_Protected_Area... and "Xpress Bios Rescue":
http://www.gigabyte.com.tw/Support/Moth ... wTechID=84Unfortunately, the BIOS code has a bug that causes it to miscalculate the size of the drive. In your case it reduces its capacity by 1TB, leaving you with only 500GB. A 1TB drive is cut down to 32MB or so.
You can restore the full native capacity of your drive using HDAT2:
http://www.hdat2.com/ You can also try the HDD Capacity Restore Tool:
http://hddguru.com/content/en/software/ ... tore-Tool/I would also upgrade your motherboard BIOS.