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If you can see the data then system area is probably ok and you should not mess with it. I would guess damaged sectors or even a bad head, but its impossible to know for sure.
You can try to run a surface test on it with MHDD to verify any read errors, this will also give a better idea of the problem. But until you know the problem, you should stop trying to get data from it.
If there are many reading errors then stability will be a problem for you to attempt recovery, you would probably need specialist hardware to reach the data. At this point it would be better for you to get it looked at by a professional.
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